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Qucik Start

The 3 essential elements of SIMPO are: BioModel (model), DataSet (data) and Project (solution).

The steps of a complete calculation process are:

  • Step 1: install the calculation client on your computer, and then sign up and sign in to Dashborad.
  • Step 2: create a BioModel.
  • Step 3: create a DataSet.
  • Step 4: create a Project to combine BioModel and DataSet, and then select a calculation engine to solve them.
Complete but not required

By cloned a Public Project, we can just start calculating without go throught all these steps. But please remember to install the calculation client and sign in before anything.

The Easiest Way​

Sharing research findings is one of the key features of SIMPO, which makes cloning a Project from the public repository become the easiest way to do the whole thing. This action will clone the correspoding BioMode, Dataset and calculation result.

  • Clone a Public Project.
  • Check the calculation result (you can change some parameters and calculation again).

Play with ASM3​

SIMPO gets lots of public classical models, we can just clone and play with them. Let's take ASM3 as a simple example.

  • Clone ASM3 from the Public to Personal BioModel repository.
  • Create a new Project with a ASM3 BioModel and an empty DataSet, then you would get (these setting would be created by default, but you can definitely change them):
    • A CSTR tank with the Targets exact the same as the Components of ASM3.
    • All Targets initial values are set to be 200.
    • 2 days calcluation time with 0.2 day interval.
    • Evaluation columns (in Project Detail Variable tab) of all Parameters of ASM3 would set to be "True".

  • Then you can just start calculation.
    • Simulaiton:
  • Evaluation:

60 seconds

Every calculation must be comfirmed inside 60 secconds, or you have to stop it and restart a new one.