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BioModel

BioModel is the place to build your own biochemical models.

Create​

There are a few ways to create a BioModel (choose 1 from 5 in below):

1. Create from Empty​

Create an empty BioModel, edit and parsed save the detial later to make it work.

  • Add new components.
  • Add new parameters.
  • Add new processes (in Matrix tab).

2. Create from Project Creation​

If you don't specify a BioModel while creating a new Project, an empty BioModel will be crated accordingly.

3. Import from Template​

Import a BioModel from a: BioModel template xlsx file

4. Clone from Public BioModel​

Clone a BioModel from the public BioModel repository.

5. Clone from Public Project​

Clone a Project from the public Project repository would also clone the correspoding BioModel.

Edit​

If a parameter is a rate parameter (such as u_max with unit /day), its unit must end withs /d, d-1, /day, day-1, 1/d, 1/day, /h, h-1, /hour, hour-1, 1/h, 1/hour, /m, m-1, /minute, minute-1, 1/m, 1/minute, /s, s-1, /second, second-1, 1/s or 1/second, this will help to unify the time unit through the whole calcualtion.

Release​

  • Create
    • 1. Create from Empty
    • 2. Create from Project Creation
    • 3. Import from Template
    • 4. Clone from Public BioModel
    • 5. Clone from Public Project
  • Edit
  • Release